screed - short read sequence utils

Copyright:2008-2012 Michigan State University Authors:Alex Nolley, C. Titus Brown Contact:ctb@msu.edu License:BSD

Contents:

• Basic Documentation
  • Notes on this document
  • Introduction
  • Getting Going
  • Quick-Start
  • Reading databases
  • Writing Custom Sequence Parsers
  • File formats as understood by screed
  • FASTA <-> FASTQ Conversion
• screed examples
  • Basic Usage
• The screed developer documentation
  • Coding guidelines and code review checklist
  • Release Documentation
• Release notes for past versions of screed
  • Release v0.5
  • Release v0.8
• Known Issues
  • List of known issues
• Contributor Code of Conduct
• License

Indices and tables

• Index
• Module Index
• Search Page